Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs68194335 | chr6:25866243 | A/T | 8.42E-5 | 503 | 37.73 | 32.62 | 4.1 | KM Plot |
KIRC | rs6845460 | chr4:186313511 | C/T | 5.66E-7 | 506 | 3.53 | 37.67 | 37.18 | KM Plot |
KIRC | rs6902211 | chr6:25767437 | G/A | 8.87E-6 | 507 | 6.8 | 33.7 | 37.73 | KM Plot |
KIRC | rs6903179 | chr6:37670272 | G/A | 2.08E-7 | 506 | 37.47 | 38.88 | 3.37 | KM Plot |
KIRC | rs6903879 | chr6:40917384 | T/C | 6.5E-7 | 507 | 5 | 37.35 | 37.42 | KM Plot |
KIRC | rs6913795 | chr6:25848025 | T/C | 6.36E-5 | 506 | 37.77 | 29.5 | 4.1 | KM Plot |
KIRC | rs6914947 | chr6:117776523 | C/T | 2.45E-6 | 502 | 37.67 | 27.35 | 4.57 | KM Plot |
KIRC | rs6933764 | chr6:37668144 | G/A | 2.72E-7 | 500 | 37.47 | 42.33 | 3.37 | KM Plot |
KIRC | rs6936811 | chr6:37656481 | G/A | 2.15E-7 | 500 | 37.42 | 35.43 | 3.37 | KM Plot |
KIRC | rs6939463 | chr6:117773090 | G/A | 3.29E-6 | 507 | 37.72 | 29.33 | 4.57 | KM Plot |
KIRC | rs6939997 | chr6:25821224 | C/T | 5.97E-5 | 509 | 37.77 | 29.5 | 4.1 | KM Plot |
KIRC | rs694671 | chr3:124366884 | T/G | 9.47E-5 | 503 | 37.03 | 39.85 | 18.92 | KM Plot |
KIRC | rs700125 | chr9:116763905 | G/A | 2.03E-13 | 502 | 1.97 | 39.62 | 37.37 | KM Plot |
KIRC | rs703773 | chr16:23653269 | G/A | 9.02E-10 | 500 | 37.47 | 37.83 | 2.43 | KM Plot |
KIRC | rs7124912 | chr11:34857046 | G/A | 8.55E-8 | 504 | 37.53 | 31.87 | 3.3 | KM Plot |